Publications
] , "Group Testing on a Network", AAAI Conference on Artificial Intelligence, 2021.
, "Group centrality maximization via network design", SIAM International Conference on Data Mining (SDM), 2018.
, "GraphSig: A Scalable Approach to Mining Significant Subgraphs in Large Graph Databases", Proceedings of the 25th International Conference on Data Engineering, {ICDE} 2009, March 29 2009 - April 2 2009, Shanghai, China, pp. 844–855, 2009.
, "Graphs-at-a-time: query language and access methods for graph databases", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2008, Vancouver, BC, Canada, June 10-12, 2008, pp. 405–418, 2008.
, "GraphRank: Statistical Modeling and Mining of Significant Subgraphs in the Feature Space", Proceedings of the 6th {IEEE} International Conference on Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China, pp. 885–890, 2006.
, "Graph Wavelets via Sparse Cuts", Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016.
, "Graph Neural Diffusion Networks for Semi-supervised Learning", CoRR, vol. abs/2201.09698, 2022.
, "Graph Macro Dynamics with Self-Attention for Event Detection", Deep Learning on Graphs: Methods and Applications (DLG-AAAI), 02/2023.
, "GPOP: Scalable Group-level Popularity Prediction for Online Content in Social Networks", Proceedings of the 26th International Conference on World Wide Web, 2017.
, "GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarking", The Twelfth International Conference on Learning Representations (ICLR), 2024.
, "Global Counterfactual Explainer for Graph Neural Networks", Web Search and Data Mining (WSDM), 02/2023.
, "Geo-clustering of Images with Missing GeoTags", 2010 {IEEE} International Conference on Granular Computing, GrC 2010, San Jose, California, USA, 14-16 August 2010, pp. 420–425, 2010.
, "Genome on Demand: Interactive Substring Searching", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 551–552, 2003.
, "A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics", {BMC} Bioinformatics, vol. 9, 2008.
, "GCOMB: Learning Budget-constrained Combinatorial Algorithms over Billion-sized Graphs", Thirty-fourth Conference on Neural Information Processing Systems (NeurIPS), 2020.
, "A Game Theoretic Approach For k-Core Minimization ", AAMAS, 2020.
, "A Game Theoretic Approach For Core Resilience", IJCAI, 2020.
, "Fragment-based Pretraining and Finetuning on Molecular Graphs", Thirty-seventh Conference on Neural Information Processing Systems (NeurIPS), 2023.
, "FlowGEN: A Generative Model for Flow Graphs", KDD '22: The 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 14 - 18, 2022: ACM, 2022.
, "Finding Top-k Similar Pairs of Objects Annotated with Terms from an Ontology", Scientific and Statistical Database Management, 22nd International Conference, {SSDBM} 2010, Heidelberg, Germany, June 30 - July 2, 2010. Proceedings, pp. 214–232, 2010.
, "Finding top-k similar pairs of objects annotated with terms from an ontology", CoRR, vol. abs/1001.2625, 2010.
, "Finding Significant Subregions in Large Image Databases", CoRR, vol. abs/0906.3585, 2009.
, "Feature-based Individual Fairness in k-Clustering", International Conference on Autonomous Agents and Multiagent Systems (AAMAS Extended Abstract), 2023.
, "FCCF: forecasting citywide crowd flows based on big data", Proceedings of the 24th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems: ACM, 2016.
, "Faster Similarity Search for Multimedia Data Via Query Transformations", Int. J. Image Graphics, vol. 3, no. 1, pp. 3–30, 2003.
, "Fast alignment of large genome databases", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 768–770, 2003.
, "Expertise and confidence explain how social influence evolves along intellective tasks", CoRR, vol. abs/2011.07168, 2020.
, "Estimating localized complexity of white-matter wiring with GANs", Medical Imaging meets NeurIPS, 2019.
, "Efficient tracking and querying for coordinated uncertain mobile objects", 29th {IEEE} International Conference on Data Engineering, {ICDE} 2013, Brisbane, Australia, April 8-12, 2013, pp. 182–193, 2013.
, "Efficient multicasting for delay tolerant networks using graph indexing", Proceedings of the {IEEE} {INFOCOM} 2012, Orlando, FL, USA, March 25-30, 2012, pp. 1386–1394, 2012.
, "Efficient Computation of Statistical Significance of Query Results in Databases", Scientific and Statistical Database Management, 20th International Conference, {SSDBM} 2008, Hong Kong, China, July 9-11, 2008, Proceedings, pp. 509–516, 2008.
, "Efficient and Robust Detection of Duplicate Videos in a Large Database", {IEEE} Trans. Circuits Syst. Video Techn., vol. 20, no. 6, pp. 870–885, 2010.
, "Efficient Algorithms for Mining Significant Substructures in Graphs with Quality Guarantees", Proceedings of the 7th {IEEE} International Conference on Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}, pp. 163–172, 2007.
, "Dynamics of Collective Performance in Collaboration Networks", XXXVI International Sunbelt Conference, Newport Beach, California, US, International Network for Social Network Analysis (INSNA), 2016.
, "Dynamic Query-Based Debugging of Object-Oriented Programs", Autom. Softw. Eng., vol. 10, no. 1, pp. 39–74, 2003.
, "Distributed Spatial Clustering in Sensor Networks", Advances in Database Technology - {EDBT} 2006, 10th International Conference on Extending Database Technology, Munich, Germany, March 26-31, 2006, Proceedings, pp. 980–1000, 2006.
, "A Distributed Database for BioMolecular Images", {SIGMOD} Record, vol. 33, no. 2, pp. 65–71, 2004.
, "Distributed Data Streams Indexing using Content-Based Routing Paradigm", 19th International Parallel and Distributed Processing Symposium {(IPDPS} 2005), {CD-ROM} / Abstracts Proceedings, 4-8 April 2005, Denver, CO, {USA}, 2005.
, "A Distance Measure for the Analysis of Polar Opinion Dynamics in Social Networks", IEEE International Conference on Data Engineering (ICDE), San Diego, California, US, IEEE, 04/2017.
, "DIST: a distributed spatio-temporal index structure for sensor networks", Proceedings of the 2005 {ACM} {CIKM} International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005, pp. 139–146, 2005.
, "Discriminative Subnetworks with Regularized Spectral Learning for Global-State Network Data", Machine Learning and Knowledge Discovery in Databases - European Conference, {ECML} {PKDD} 2014, Nancy, France, September 15-19, 2014. Proceedings, Part {I}, pp. 290–306, 2014.
, "Discovery of LRRK2 inhibitors using sequential in silico joint pharmacophore space (JPS) and ensemble docking", Bioorganic & medicinal chemistry letters, vol. 25, pp. 2713–2719, 2015.
, "DGCLUSTER: A Neural Framework for Attributed Graph Clustering via Modularity Maximization", The 38th Annual AAAI Conference on Artificial Intelligence (AAAI'24), 2024.
, "Deriving phylogenetic trees from the similarity analysis of metabolic pathways", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 138–146, 2003.
, "Deep Representations for Time-varying Brain Datasets", KDD '22: The 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 14 - 18, 2022: ACM, 2022.
, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
, "DANR: Discrepancy-aware Network Regularization", SIAM International Conference on Data Mining (SDM), 2020.
, "Current Challenges in Bioimage Database Design", Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference Workshops {&} Poster Abstracts, {CSB} 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, pp. 375–379, 2005.
, "On Critical Event Observability Using Social Networks: A Disaster Monitoring Perspective", Military Communications Conference (MILCOM), 2014 IEEE: IEEE, 2014.
, "Content-based Modeling and Prediction of Information Dissemination", International Conference on Advances in Social Networks Analysis and Mining, {ASONAM} 2011, Kaohsiung, Taiwan, 25-27 July 2011, pp. 21–28, 2011.
, "Computationally designed small molecules disassemble both soluble oligomers and protofibrils of amyloid β-protein responsible for Alzheimer’s disease", ACS Chemical Neuroscience, vol. 14, pp. 2717–2726, 2023.
, "Computationally Designed Molecules Modulate ALS-Related Amyloidogenic TDP-43307–319 Aggregation", ACS Chemical Neuroscience, vol. 14, pp. 4395–4408, 2023.
, "Combining Physics and Machine Learning for Network Flow Estimation", 9th International Conference on Learning Representations, ICLR 2021, Virtual Event, Austria, May 3-7, 2021: OpenReview.net, 2021.
, "Cloud service placement via subgraph matching", {IEEE} 30th International Conference on Data Engineering, Chicago, {ICDE} 2014, IL, USA, March 31 - April 4, 2014, pp. 832–843, 2014.
, "Closure-Tree: An Index Structure for Graph Queries", Proceedings of the 22nd International Conference on Data Engineering, {ICDE} 2006, 3-8 April 2006, Atlanta, GA, {USA}, pp. 38, 2006.
, "Browsing and placement of multi-resolution images on parallel disks", Multimedia Syst., vol. 8, no. 6, pp. 459–469, 2003.
, "A Broader Picture of Random-walk Based Graph Embedding", KDD '21: The 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Virtual Event, Singapore, August 14-18, 2021: ACM, 2021.
, "Bisque: Advances in Bioimage Databases", {IEEE} Data Eng. Bull., vol. 35, no. 3, pp. 56–64, 2012.
, "Bisque: a platform for bioimage analysis and management", Bioinformatics, vol. 26, no. 4, pp. 544–552, 2010.
, "Beyond Models: Forecasting Complex Network Processes Directly from Data", Proceedings of the 24th International Conference on World Wide Web, {WWW} 2015, Florence, Italy, May 18-22, 2015, pp. 885–895, 2015.
, "Behavior Query Discovery in System-Generated Temporal Graphs", {PVLDB}, vol. 9, pp. 240–251, 2015.
, "Base motif recognition and design of DNA templates for fluorescent silver clusters by machine learning", Advanced Materials, vol. 26, pp. 5839–5845, 2014.
, "Automated Protein Classification Using Consensus Decision", 3rd International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004, pp. 224–235, 2004.
, "Assessing and ranking structural correlations in graphs", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2011, Athens, Greece, June 12-16, 2011, pp. 937–948, 2011.
, "As Strong as the Weakest Link: Mining Diverse Cliques in Weighted Graphs", Machine Learning and Knowledge Discovery in Databases - European Conference, {ECML} {PKDD} 2013, Prague, Czech Republic, September 23-27, 2013, Proceedings, Part {I}, pp. 525–540, 2013.
, "Approximate Algorithms for Data-Driven Influence Limitation", IEEE Trans. Knowl. Data Eng., vol. 34, pp. 2641–2652, 2022.
, "Approximate Algorithms for Data-driven Influence Limitation", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2020.
, "Applications of Top-k Representative Queries", Proceedings of the Sixth Workshop on Semantic Web Information Management, {SWIM} 2014, Snowbird, UT, USA, June 22-27, 2014, pp. 40:1–40:2, 2014.
, "APLA: Indexing Arbitrary Probability Distributions", Proceedings of the 23rd International Conference on Data Engineering, {ICDE} 2007, The Marmara Hotel, Istanbul, Turkey, April 15-20, 2007, pp. 946–955, 2007.
, "Answering top-k representative queries on graph databases", International Conference on Management of Data, {SIGMOD} 2014, Snowbird, UT, USA, June 22-27, 2014, pp. 1163–1174, 2014.
, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", {PVLDB}, vol. 5, no. 3, pp. 169–180, 2011.
, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", CoRR, vol. abs/1111.7165, 2011.
, "Analyzing Performance of Lease-Based Schemes under Failures", 30th {IEEE} Symposium on Reliable Distributed Systems {(SRDS} 2011), Madrid, Spain, October 4-7, 2011, pp. 193–202, 2011.
, "Analysis of protein-protein interaction networks using random walks", Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD} 2005, Chicago, Illinois, USA, August 21, 2005, pp. 61–68, 2005.
, "AI Decision Systems with Feedback Loop Active Learner", WSDM Crowd Science Workshop, 2023.
, "An Adaptive and Scalable Middleware for Distributed Indexing of Data Streams", Databases, Information Systems, and Peer-to-Peer Computing, First International Workshop, DBISP2P, Berlin Germany, September 7-8, 2003, Revised Papers, pp. 123–137, 2003.
, "Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks", Adv. Bioinformatics, vol. 2009, pp. 787128:1–787128:9, 2009.
, "Accurate and scalable nearest neighbors in large networks based on effective importance", 22nd {ACM} International Conference on Information and Knowledge Management, CIKM'13, San Francisco, CA, USA, October 27 - November 1, 2013, pp. 1009–1018, 2013.