Publications
] , "ViVo: Visual Vocabulary Construction for Mining Biomedical Images", Proceedings of the 5th {IEEE} International Conference on Data Mining {(ICDM} 2005), 27-30 November 2005, Houston, Texas, {USA}, pp. 50–57, 2005.
, "Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets", {BMC} Bioinformatics, vol. 12, pp. 7, 2011.
, "A Unified Framework for Monitoring Data Streams in Real Time", Proceedings of the 21st International Conference on Data Engineering, {ICDE} 2005, 5-8 April 2005, Tokyo, Japan, pp. 44–55, 2005.
, "Tree++: Truncated Tree Based Graph Kernels", IEEE Trans. Knowl. Data Eng., vol. 33, pp. 1778–1789, 2021.
, "Towards Scalable Network Delay Minimization", {IEEE} 16th International Conference on Data Mining, {ICDM} 2016, December 12-15, 2016, Barcelona, Spain, 2016.
, "Towards scalable critical alert mining", The 20th {ACM} {SIGKDD} International Conference on Knowledge Discovery and Data Mining, {KDD} '14, New York, NY, {USA} - August 24 - 27, 2014, pp. 1057–1066, 2014.
, "Towards Index-based Similarity Search for Protein Structure Databases", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 148–158, 2003.
, "Towards Community Discovery in Signed Collaborative Interaction Networks", {ICDMW} 2010, The 10th {IEEE} International Conference on Data Mining Workshops, Sydney, Australia, 13 December 2010, pp. 288–295, 2010.
, "Topology design under adversarial dynamics", 14th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2016, Tempe, AZ, USA, May 9-13, 2016, 2016.
, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
, "Top-k Spatial Joins of Probabilistic Objects", Proceedings of the 24th International Conference on Data Engineering, {ICDE} 2008, April 7-12, 2008, Cancún, México, pp. 566–575, 2008.
, "Through the Grapevine: A Comparison of News in Microblogs and Traditional Media", Trends in Social Network Analysis: Information Propagation, User Behavior Modeling, Forecasting, and Vulnerability Assessment, pp. 135–168, 2017.
, "Synopses for probabilistic data over large domains", {EDBT} 2011, 14th International Conference on Extending Database Technology, Uppsala, Sweden, March 21-24, 2011, Proceedings, pp. 389–400, 2011.
, "SWAT: Hierarchical Stream Summarization in Large Networks", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 303–314, 2003.
, "Summarizing Network Processes with Network-constrained Boolean Matrix Factorization", IEEE International Conference on Data Mining (ICDM), 2018.
, "Subnetwork Mining with Spatial and Temporal Smoothness", SIAM international conference on data mining (SDM), 2017.
, "Structure and evolution of missed collaborations in large networks", 2014 Proceedings {IEEE} {INFOCOM} Workshops, Toronto, ON, Canada, April 27 - May 2, 2014, pp. 849–854, 2014.
, "Static and Dynamic Structural Correlations in Graphs", {IEEE} Trans. Knowl. Data Eng., vol. 25, no. 9, pp. 2147–2160, 2013.
, "SPREE: Object Prefetching for Mobile Computers", On the Move to Meaningful Internet Systems 2004: CoopIS, DOA, and ODBASE, {OTM} Confederated International Conferences, Agia Napa, Cyprus, October 25-29, 2004, Proceedings, Part {II}, pp. 1340–1357, 2004.
, "The Spread of Physical Activity Through Social Networks", Proceedings of the 26th International Conference on World Wide Web: ACM, 2017.
, "Speeding up whole-genome alignment by indexing frequency vectors", Bioinformatics, vol. 20, no. 13, pp. 2122–2134, 2004.
, " Spectral Algorithms for Temporal Graph Cuts", The Web Conference (WWW), 2018.
, "Spatial coherence of oriented white matter microstructure: Applications to white matter regions associated with genetic similarity", NeuroImage, 2018.
, "The social media genome: modeling individual topic-specific behavior in social media", Advances in Social Networks Analysis and Mining 2013, {ASONAM} '13, Niagara, ON, Canada - August 25 - 29, 2013, pp. 236–242, 2013.
, "The Social Media Genome: Modeling Individual Topic-Specific Behavior in Social Media", CoRR, vol. abs/1307.0309, 2013.
, "SIMP: accurate and efficient near neighbor search in high dimensional spaces", 15th International Conference on Extending Database Technology, {EDBT} '12, Berlin, Germany, March 27-30, 2012, Proceedings, pp. 492–503, 2012.
, "SigSpot: mining significant anomalous regions from time-evolving networks (abstract only)", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2012, Scottsdale, AZ, USA, May 20-24, 2012, pp. 865, 2012.
, "Sign prediction in social networks based on users reputation and optimism", Social Network Analysis and Mining, vol. 6, pp. 91, 2016.
, "Sensing for Mobile Objects", Managing and Mining Sensor Data, pp. 299–348, 2013.
, "Scalable ranking for preference queries", Proceedings of the 2005 {ACM} {CIKM} International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005, pp. 313–314, 2005.
, "Scalable Index Structures for Biological Data", Data Mining in Bioinformatics, pp. 275–296, 2005.
, "Scalable Discovery of Best Clusters on Large Graphs", {PVLDB}, vol. 3, no. 1, pp. 693–702, 2010.
, "RRW: repeated random walks on genome-scale protein networks for local cluster discovery", {BMC} Bioinformatics, vol. 10, pp. 283, 2009.
, "Reachability Analysis and Modeling of Dynamic Event Networks", Machine Learning and Knowledge Discovery in Databases - European Conference, {ECML} {PKDD} 2012, Bristol, UK, September 24-28, 2012. Proceedings, Part {I}, pp. 442–457, 2012.
, "Querying spatial patterns", {EDBT} 2010, 13th International Conference on Extending Database Technology, Lausanne, Switzerland, March 22-26, 2010, Proceedings, pp. 418–429, 2010.
, "Querying and Mining Biological Databases", {OMICS}, vol. 7, no. 1, pp. 7–8, 2003.
, "Query Language and Access Methods for Graph Databases", Managing and Mining Graph Data, pp. 125–160, 2010.
, "Quantifying spatial relationships from whole retinal images", Bioinformatics, vol. 29, no. 7, pp. 940–946, 2013.
, "PSI: indexing protein structures for fast similarity search", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 81–83, 2003.
, "Progressive Searching of Biological Sequences", {IEEE} Data Eng. Bull., vol. 27, no. 3, pp. 32–39, 2004.
, "ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure", Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, pp. 264–275, 2004.
, "Profile Based Sub-Image Search in Image Databases", CoRR, vol. abs/1010.1496, 2010.
, "Probabilistic Segmentation and Analysis of Horizontal Cells", Proceedings of the 6th {IEEE} International Conference on Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China, pp. 980–985, 2006.
, "Predictive models for human–AI nexus in group decision making", Annals of the New York Academy of Sciences, vol. 1514, pp. 70–81, 2022.
, "Predictive Modeling and Scalability Analysis for Large Graph Analytics", IFIP/IEEE International Symposium on Integrated Network Management, {IM} 2017, 8-12 May, Lisbon, Portugal, 2017.
, "Predicting genetic interactions with random walks on biological networks", {BMC} Bioinformatics, vol. 10, 2009.
, "POLE: Polarized Embedding for Signed Networks", WSDM '22: The Fifteenth ACM International Conference on Web Search and Data Mining, Virtual Event / Tempe, AZ, USA, February 21 - 25, 2022: ACM, 2022.
, "Polar Opinion Dynamics in Social Networks", IEEE Transactions on Automatic Control (TAC), 2017.
, "Outlier Detection from Network Data with Subnetwork Interpretation", IEEE International Conference Data Mining (ICDM), 2016.
, "Optimizing Similarity Search for Arbitrary Length Time Series Queries", {IEEE} Trans. Knowl. Data Eng., vol. 16, no. 4, pp. 418–433, 2004.
, "Optimization Techniques for Reactive Network Monitoring", {IEEE} Trans. Knowl. Data Eng., vol. 21, no. 9, pp. 1343–1357, 2009.
, "Novel Method for Pharmacophore Analysis by Examining the Joint Pharmacophore Space", Journal of Chemical Information and Modeling, vol. 51, no. 5, pp. 1106–1121, 2011.
, "Noticeable Network Delay Minimization via Node Upgrades", International Conference on Very Large Data Bases (VLDB), 2018.
, "NetSpot: Spotting Significant Anomalous Regions on Dynamic Networks", Proceedings of the 13th {SIAM} International Conference on Data Mining, May 2-4, 2013. Austin, Texas, {USA.}, pp. 28–36, 2013.
, "Nearest Keyword Set Search in Multi-dimensional Datasets", CoRR, vol. abs/1409.3867, 2014.
, "Nearest Keyword Set Search in Multi-Dimensional Datasets", {IEEE} Trans. Knowl. Data Eng., vol. 28, pp. 741–755, 2016.
, "Multi-Resolution Attention for Personalized Item Search", WSDM '22: The Fifteenth ACM International Conference on Web Search and Data Mining, Virtual Event / Tempe, AZ, USA, February 21 - 25, 2022: ACM, 2022.
, "On Multi-Dimensional Team Formation", Proceedings of the 31st Canadian Conference on Computational Geometry, CCCG 2019, August 8-10, 2019, University of Alberta, Edmonton, Alberta, Canada, 2019.
, "Molecular Function Prediction Using Neighborhood Features", {IEEE/ACM} Trans. Comput. Biology Bioinform., vol. 7, no. 2, pp. 208–217, 2010.
, "Modulating ALS-Related Amyloidogenic TDP-43307–319 Oligomeric Aggregates with Computationally Derived Therapeutic Molecules", Biochemistry, vol. 59, pp. 499–508, 2019.
, "Modeling the Co-evolution of Committee Formation and Awareness Networks in Organizations", Complex Networks & Their Applications VI - Proceedings of Complex Networks 2017 (The Sixth International Conference on Complex Networks and Their Applications), COMPLEX NETWORKS 2017, Lyon, France, November 29 - December 1, 2017: Springer, 2017.
, "Modeling individual topic-specific behavior and influence backbone networks in social media", Social Netw. Analys. Mining, vol. 4, no. 1, pp. 204, 2014.
, "Modeling Human-AI Team Decision Making", CoRR, vol. abs/2201.02759, 2022.
, "Modeling Complex Diseases Using Discriminative Network Fragments - (Invited Keynote Talk)", Bioinformatics Research and Applications - 8th International Symposium, {ISBRA} 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings, pp. 249, 2012.
, "MIST: Distributed Indexing and Querying in Sensor Networks using Statistical Models", Proceedings of the 33rd International Conference on Very Large Data Bases, University of Vienna, Austria, September 23-27, 2007, pp. 854–865, 2007.
, "Mining Statistically Significant Molecular Substructures for Efficient Molecular Classification", Journal of Chemical Information and Modeling, vol. 49, no. 11, pp. 2537–2550, 2009.
, "Mining Heavy Subgraphs in Time-Evolving Networks", 11th {IEEE} International Conference on Data Mining, {ICDM} 2011, Vancouver, BC, Canada, December 11-14, 2011, pp. 81–90, 2011.
, "Mining Evolving Network Processes", 2013 {IEEE} 13th International Conference on Data Mining, Dallas, TX, USA, December 7-10, 2013, pp. 537–546, 2013.
, "Mining discriminative subgraphs from global-state networks", The 19th {ACM} {SIGKDD} International Conference on Knowledge Discovery and Data Mining, {KDD} 2013, Chicago, IL, USA, August 11-14, 2013, pp. 509–517, 2013.
, "Mind Reader: Reconstructing complex images from brain activities", Thirty-sixth Conference on Neural Information Processing Systems (NeurIPS), 2022.
, "MAP: Searching Large Genome Databases", Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003, Lihue, Hawaii, USA, January 3-7, 2003, pp. 303–314, 2003.
, "Making a Small World Smaller: Path Optimization in Networks", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2018.
, "Learning Prototype Classifiers for Long-Tailed Recognition", Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, IJCAI 2023, 19th-25th August 2023, Macao, SAR, China: ijcai.org, 2023.
, "Learning Predictive Substructures with Regularization for Network Data", Data Mining (ICDM), 2015 IEEE International Conference on: IEEE, 2015.
, "Learning Neural Contracting Dynamics: Extended Linearization and Global Guarantees", CoRR, vol. abs/2402.08090, 2024.
, "Learning Multiclassifiers with Predictive Features that Vary with Data Distribution", IEEE International Conference on Big Data (IEEE BigData 2018), Seattle, WA, USA, December 10-13, 2018: IEEE, 2018.
, "Learning Deep Graph Representations via Convolutional Neural Networks", IEEE Trans. Knowl. Data Eng., vol. 34, pp. 2268–2279, 2022.
, "Learning about learning: Mining human brain sub-network biomarkers from fMRI data", PLoS one, vol. 12, pp. e0184344, 2017.
, "LB-Index: A Multi-Resolution Index Structure for Images", Proceedings of the 22nd International Conference on Data Engineering, {ICDE} 2006, 3-8 April 2006, Atlanta, GA, {USA}, pp. 144, 2006.
, "A Latent Parameter Node-Centric Model for Spatial Networks", CoRR, vol. abs/1210.4246, 2012.
, "Joining Massive High-Dimensional Datasets", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 265–276, 2003.
, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
, "Inhibiting and remodeling toxic amyloid-beta oligomer formation using a computationally designed drug molecule that targets Alzheimer’s disease", Journal of The American Society for Mass Spectrometry, vol. 30, pp. 85–93, 2018.
, "Inferring the Underlying Structure of Information Cascades", 12th {IEEE} International Conference on Data Mining, {ICDM} 2012, Brussels, Belgium, December 10-13, 2012, pp. 1218–1223, 2012.
, "Inferring the Underlying Structure of Information Cascades", CoRR, vol. abs/1210.3587, 2012.
, "Inferring causal molecular networks: empirical assessment through a community-based effort", Nature methods, vol. 13, pp. 310–318, 2016.
, "Inference of Infrastructure Network Flows via Physics-Inspired Implicit Neural Networks", IEEE Conference on Control Technology and Applications, CCTA 2023, Bridgetown, Barbados, August 16-18, 2023: IEEE, 2023.
, "Indexing the Earth Mover's Distance Using Normal Distributions", {PVLDB}, vol. 5, no. 3, pp. 205–216, 2011.
, "Indexing the Earth Mover's Distance Using Normal Distributions", CoRR, vol. abs/1111.7168, 2011.
, "Indexing Spatially Sensitive Distance Measures Using Multi-resolution Lower Bounds", Advances in Database Technology - {EDBT} 2006, 10th International Conference on Extending Database Technology, Munich, Germany, March 26-31, 2006, Proceedings, pp. 865–883, 2006.
, "Indexing and Querying Data Streams", Data Streams - Models and Algorithms, pp. 237–259, 2007.
, "Indexing and mining topological patterns for drug discovery", 15th International Conference on Extending Database Technology, {EDBT} '12, Berlin, Germany, March 27-30, 2012, Proceedings, pp. 562–565, 2012.
, "Index-based Similarity Search for Protein Structure Databases", J. Bioinformatics and Computational Biology, vol. 2, no. 1, pp. 99–126, 2004.
, "Increasing Concurrency in Databases Using Program Analysis", {ECOOP} 2004 - Object-Oriented Programming, 18th European Conference, Oslo, Norway, June 14-18, 2004, Proceedings, pp. 341–363, 2004.
, "Incorporating User's Preference into Attributed Graph Clustering", IEEE Trans. Knowl. Data Eng., vol. 33, pp. 3716–3728, 2021.
, "Incorporating Heterophily into Graph Neural Networks for Graph Classification", CoRR, vol. abs/2203.07678, 2022.
, "I act, therefore I judge: network sentiment dynamics based on user activity change", Advances in Social Networks Analysis and Mining 2013, {ASONAM} '13, Niagara, ON, Canada - August 25 - 29, 2013, pp. 396–402, 2013.
, "Hierarchical in-network attribute compression via importance sampling", 31st {IEEE} International Conference on Data Engineering, {ICDE} 2015, Seoul, South Korea, April 13-17, 2015, pp. 951–962, 2015.
, "Herding "small" streaming queries", Proceedings of the 9th {ACM} International Conference on Distributed Event-Based Systems, {DEBS} '15, Oslo, Norway, June 29 - July 3, 2015, 2015.