Publications

Found 164 results
Author Title [ Type(Desc)] Year
Journal Article
Medya, S., A. Silva, and A. Singh, "Approximate Algorithms for Data-driven Influence Limitation", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2020.
Copp, S. M., P. Bogdanov, M. Debord, A. Singh, and E. Gwinn, "Base motif recognition and design of DNA templates for fluorescent silver clusters by machine learning", Advanced Materials, vol. 26, pp. 5839–5845, 2014.
Zong, B., X. Xiao, Z. Li, Z. Wu, Z. Qian, X. Yan, A. K. Singh, and G. Jiang, "Behavior Query Discovery in System-Generated Temporal Graphs", {PVLDB}, vol. 9, pp. 240–251, 2015.
Kvilekval, K., D. Fedorov, B. Obara, A. K. Singh, and B.. S. Manjunath, "Bisque: a platform for bioimage analysis and management", Bioinformatics, vol. 26, no. 4, pp. 544–552, 2010.
Kvilekval, K., D. Fedorov, U. Gaur, S. Goff, N. Merchant, B.. S. Manjunath, and A. K. Singh, "Bisque: Advances in Bioimage Databases", {IEEE} Data Eng. Bull., vol. 35, no. 3, pp. 56–64, 2012.
Prabhakar, S., D. Agrawal, A. El Abbadi, A. K. Singh, and T. R. Smith, "Browsing and placement of multi-resolution images on parallel disks", Multimedia Syst., vol. 8, no. 6, pp. 459–469, 2003.
cCamoglu, O. \, T. Can, A. K. Singh, and Y-F. Wang, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
Lang, C. A., S. S. Ray, M. Liu, A. K. Singh, and G. D. Cuny, "Discovery of LRRK2 inhibitors using sequential in silico joint pharmacophore space (JPS) and ensemble docking", Bioorganic & medicinal chemistry letters, vol. 25, pp. 2713–2719, 2015.
Amelkin, V., P. Bogdanov, and A. K. Singh, "A Distance Measure for the Analysis of Polar Opinion Dynamics in Social Networks", ACM Transactions on Knowledge Discovery from Data (TKDD), 2019.
Singh, A. K., B.. S. Manjunath, and R. F. Murphy, "A Distributed Database for BioMolecular Images", {SIGMOD} Record, vol. 33, no. 2, pp. 65–71, 2004.
Lencevicius, R., U. Hölzle, and A. K. Singh, "Dynamic Query-Based Debugging of Object-Oriented Programs", Autom. Softw. Eng., vol. 10, no. 1, pp. 39–74, 2003.
Amelkin, V., O. Askarisichani, Y. Ji Kim, T. W. Malone, and A. K. Singh, "Dynamics of Collective Performance in Collaboration Networks", PLOS ONE.
Amelkin, V., O. Askarisichani, Y. Ji Kim, T. W. Malone, and A. K. Singh, "Dynamics of Collective Performance in Collaboration Networks", PLOS ONE, vol. 13, pp. 1-31, 10, 2018.
Sarkar, A., V. Singh, P. Ghosh, B. S. Manjunath, and A. K. Singh, "Efficient and Robust Detection of Duplicate Videos in a Large Database", {IEEE} Trans. Circuits Syst. Video Techn., vol. 20, no. 6, pp. 870–885, 2010.
Hallgrímsson, H. T., R. Sharan, S. T. Grafton, and A. K. Singh, "Estimating localized complexity of white-matter wiring with GANs", Medical Imaging meets NeurIPS, 2019.
Lang, C. A., and A. K. Singh, "Faster Similarity Search for Multimedia Data Via Query Transformations", Int. J. Image Graphics, vol. 3, no. 1, pp. 3–30, 2003.
Singh, V., A. Bhattacharya, and A. K. Singh, "Finding Significant Subregions in Large Image Databases", CoRR, vol. abs/0906.3585, 2009.
Bhattacharya, A., A. Bhowmick, and A. K. Singh, "Finding top-k similar pairs of objects annotated with terms from an ontology", CoRR, vol. abs/1001.2625, 2010.
Bhattacharya, A., S. Levy, A. LeBoeuf, M. Gaylord, L. Wilson, A. K. Singh, and S. C. Feinstein, "A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics", {BMC} Bioinformatics, vol. 9, 2008.
Hoang, M. X., X-H. Dang, X. Wu, Z. Yan, and A. K. Singh, "GPOP: Scalable Group-level Popularity Prediction for Online Content in Social Networks", Proceedings of the 26th International Conference on World Wide Web, 2017.
Ye, W., D. Mautz, C. Boehm, A. Singh, and C. Plant, "Incorporating User's Preference into Attributed Graph Clustering", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2020.
Ye, W., D. Mautz, C. Boehm, A. Singh, and C. Plant, "Incorporating User's Preference into Attributed Graph Clustering", IEEE Transactions on Knowledge Discovery and Data Engineering (TKDE).
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Index-based Similarity Search for Protein Structure Databases", J. Bioinformatics and Computational Biology, vol. 2, no. 1, pp. 99–126, 2004.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", {PVLDB}, vol. 5, no. 3, pp. 205–216, 2011.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", CoRR, vol. abs/1111.7168, 2011.
Askarisichani, O., and M. Jalili, "Inference of hidden social power through opinion formation in complex networks", IEEE Transactions on Network Science and Engineering (TSNE), vol. 4, issue 3, pp. 164, 07/2017.
Hill, S. M., L. M. Heiser, T. Cokelaer, M. Unger, N. K. Nesser, D. E. Carlin, Y. Zhang, A. Sokolov, E. O. Paull, C. K. Wong, et al., "Inferring causal molecular networks: empirical assessment through a community-based effort", Nature methods, vol. 13, pp. 310–318, 2016.
Zong, B., Y. Wu, A. K. Singh, and X. Yan, "Inferring the Underlying Structure of Information Cascades", CoRR, vol. abs/1210.3587, 2012.
cCamoglu, O. \, T. Can, and A. K. Singh, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
Larusso, N. D., B. E. Ruttenberg, and A. K. Singh, "A Latent Parameter Node-Centric Model for Spatial Networks", CoRR, vol. abs/1210.4246, 2012.
Ye, W., O. Askarisichani, A. Jones, and A. Singh, "Learning Deep Graph Representations via Convolutional Neural Networks", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2020.
Medya, S., P. Bogdanov, and A. Singh, "Making a Small World Smaller: Path Optimization in Networks", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2018.
Ranu, S., and A. K. Singh, "Mining Statistically Significant Molecular Substructures for Efficient Molecular Classification", Journal of Chemical Information and Modeling, vol. 49, no. 11, pp. 2537–2550, 2009.
Bogdanov, P., M. Busch, J. Moehlis, A. K. Singh, and B. K. Szymanski, "Modeling individual topic-specific behavior and influence backbone networks in social media", Social Netw. Analys. Mining, vol. 4, no. 1, pp. 204, 2014.
Bogdanov, P., and A. K. Singh, "Molecular Function Prediction Using Neighborhood Features", {IEEE/ACM} Trans. Comput. Biology Bioinform., vol. 7, no. 2, pp. 208–217, 2010.
Singh, V., and A. K. Singh, "Nearest Keyword Set Search in Multi-dimensional Datasets", CoRR, vol. abs/1409.3867, 2014.
Singh, V., B. Zong, and A. K. Singh, "Nearest Keyword Set Search in Multi-Dimensional Datasets", {IEEE} Trans. Knowl. Data Eng., vol. 28, pp. 741–755, 2016.
Ranu, S., and A. K. Singh, "Novel Method for Pharmacophore Analysis by Examining the Joint Pharmacophore Space", Journal of Chemical Information and Modeling, vol. 51, no. 5, pp. 1106–1121, 2011.
Bulut, A., N. Koudas, A. Meka, A. K. Singh, and D. Srivastava, "Optimization Techniques for Reactive Network Monitoring", {IEEE} Trans. Knowl. Data Eng., vol. 21, no. 9, pp. 1343–1357, 2009.
Kahveci, T., and A. K. Singh, "Optimizing Similarity Search for Arbitrary Length Time Series Queries", {IEEE} Trans. Knowl. Data Eng., vol. 16, no. 4, pp. 418–433, 2004.
Dang, X-H., A. Silva, A. Singh, A. Swami, and P. Basu, "Outlier Detection from Network Data with Subnetwork Interpretation", IEEE International Conference Data Mining (ICDM), 2016.
Amelkin, V., F. Bullo, and A. K. Singh, "Polar Opinion Dynamics in Social Networks", IEEE Transactions on Automatic Control (TAC), 2017.
Chipman, K. C., and A. K. Singh, "Predicting genetic interactions with random walks on biological networks", {BMC} Bioinformatics, vol. 10, 2009.
Singh, V., and A. K. Singh, "Profile Based Sub-Image Search in Image Databases", CoRR, vol. abs/1010.1496, 2010.
Kahveci, T., and A. K. Singh, "Progressive Searching of Biological Sequences", {IEEE} Data Eng. Bull., vol. 27, no. 3, pp. 32–39, 2004.
Ruttenberg, B. E., G. Luna, G. P. Lewis, S. K. Fisher, and A. K. Singh, "Quantifying spatial relationships from whole retinal images", Bioinformatics, vol. 29, no. 7, pp. 940–946, 2013.
Singh, A. K., "Querying and Mining Biological Databases", {OMICS}, vol. 7, no. 1, pp. 7–8, 2003.
Macropol, K., T. Can, and A. K. Singh, "RRW: repeated random walks on genome-scale protein networks for local cluster discovery", {BMC} Bioinformatics, vol. 10, pp. 283, 2009.
Macropol, K., and A. K. Singh, "Scalable Discovery of Best Clusters on Large Graphs", {PVLDB}, vol. 3, no. 1, pp. 693–702, 2010.
Shahriari, M., O. Askarisich Sichani, J. Gharibshah, and M. Jalili, "Sign prediction in social networks based on users reputation and optimism", Social Network Analysis and Mining, vol. 6, pp. 91, 2016.
Bogdanov, P., M. Busch, J. Moehlis, A. K. Singh, and B. K. Szymanski, "The Social Media Genome: Modeling Individual Topic-Specific Behavior in Social Media", CoRR, vol. abs/1307.0309, 2013.
Hallgrímsson, H. T., M. Cieslak, L. Foschini, S. T. Grafton, and A. K. Singh, "Spatial coherence of oriented white matter microstructure: Applications to white matter regions associated with genetic similarity", NeuroImage, 2018.
Kahveci, T., V. Ljosa, and A. K. Singh, "Speeding up whole-genome alignment by indexing frequency vectors", Bioinformatics, vol. 20, no. 13, pp. 2122–2134, 2004.
Wu, J., Z. Guan, Q. Zhang, A. K. Singh, and X. Yan, "Static and Dynamic Structural Correlations in Graphs", {IEEE} Trans. Knowl. Data Eng., vol. 25, no. 9, pp. 2147–2160, 2013.
Askarisichani, O., J. Ng Lane, F. Bullo, N. E. Friedkin, A. K. Singh, and B. Uzzi, "Structural Balance Emerges and Explains Performance in Risky Decision-Making", Nature Communications, vol. 10, issue 1, 06/2019.
Dang, X. Hong, H. You, A. K. Singh, and S. Grafton, "Subnetwork Mining with Spatial and Temporal Smoothness", SIAM international conference on data mining (SDM), 2017.
Ciftcioglu, E. Necdet, S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
Ye, W., Z. Wang, R. Redberg, and A. Singh, "Tree++: Truncated Tree Based Graph Kernels", IEEE Transactions on Knowledge and Data Engineering (TKDE).
Ye, W., Z. Wang, R. Redberg, and A. Singh, "Tree++: Truncated Tree Based Graph Kernels", IEEE Transactions on Knowledge and Data Engineering (TKDE).
Ye, W., Z. Wang, R. Redberg, and A. Singh, "Tree++: Truncated Tree Based Graph Kernels", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2019.
Chipman, K. C., and A. K. Singh, "Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets", {BMC} Bioinformatics, vol. 12, pp. 7, 2011.
Presentation
Amelkin, V., O. Askarisichani, Y. Ji Kim, T. W. Malone, and A. K. Singh, "Dynamics of Collective Performance in Collaboration Networks", XXXVI International Sunbelt Conference, Newport Beach, California, US, International Network for Social Network Analysis (INSNA), 2016.
Report
Amelkin, V., F. Bullo, and A. K. Singh, "Polar Opinion Dynamics in Social Networks", 32'nd Southern California Control Workshop, Caltech, 04/2017.
Unpublished
Amelkin, V., P. Bogdanov, and A. K. Singh, "A Distance Measure for the Analysis of Polar Opinion Dynamics in Social Networks", arXiv:1510.05058 [cs.SI], 10/2015.

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