Publications

Found 38 results
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2023
Kosan, M., L. He, S. Agrawal, H. Liu, and C. Chetia, "AI Decision Systems with Feedback Loop Active Learner", WSDM Crowd Science Workshop, 2023.
Liu, X., S. Duan, Y. Jin, E. Walker, M. Tsao, J. H. Jang, Z. Chen, A. K. Singh, K. Lazar Cantrell, H. I. Ingolfsson, et al., "Computationally Designed Molecules Modulate ALS-Related Amyloidogenic TDP-43307–319 Aggregation", ACS Chemical Neuroscience, vol. 14, pp. 4395–4408, 2023.
Liu, X., S. Duan, Y. Jin, E. Walker, M. Tsao, J. H. Jang, Z. Chen, A. K. Singh, K. Lazar Cantrell, H. I. Ingolfsson, et al., "Computationally Designed Molecules Modulate ALS-Related Amyloidogenic TDP-43307–319 Aggregation", ACS Chemical Neuroscience, vol. 14, pp. 4395–4408, 2023.
2022
Kocayusufoglu, F., T. Wu, A. Singh, G. Roumpos, H-T. Cheng, S. Jain, E. H. Chi, and A. K. Singh, "Multi-Resolution Attention for Personalized Item Search", WSDM '22: The Fifteenth ACM International Conference on Web Search and Data Mining, Virtual Event / Tempe, AZ, USA, February 21 - 25, 2022: ACM, 2022.
Kocayusufoglu, F., T. Wu, A. Singh, G. Roumpos, H-T. Cheng, S. Jain, E. H. Chi, and A. K. Singh, "Multi-Resolution Attention for Personalized Item Search", WSDM '22: The Fifteenth ACM International Conference on Web Search and Data Mining, Virtual Event / Tempe, AZ, USA, February 21 - 25, 2022: ACM, 2022.
2019
Laos, V., D. Bishop, C. A. Lang, N. M. Marsh, K. Lazar Cantrell, S. K. Buratto, A. K. Singh, and M. T. Bowers, "Modulating ALS-Related Amyloidogenic TDP-43307–319 Oligomeric Aggregates with Computationally Derived Therapeutic Molecules", Biochemistry, vol. 59, pp. 499–508, 2019.
2018
Hallgrímsson, H. T., M. Cieslak, L. Foschini, S. T. Grafton, and A. K. Singh, "Spatial coherence of oriented white matter microstructure: Applications to white matter regions associated with genetic similarity", NeuroImage, 2018.
2017
Jones, A. T., N. E. Friedkin, and A. K. Singh, "Modeling the Co-evolution of Committee Formation and Awareness Networks in Organizations", Complex Networks & Their Applications VI - Proceedings of Complex Networks 2017 (The Sixth International Conference on Complex Networks and Their Applications), COMPLEX NETWORKS 2017, Lyon, France, November 29 - December 1, 2017: Springer, 2017.
Jones, A. T., N. E. Friedkin, and A. K. Singh, "Modeling the Co-evolution of Committee Formation and Awareness Networks in Organizations", Complex Networks & Their Applications VI - Proceedings of Complex Networks 2017 (The Sixth International Conference on Complex Networks and Their Applications), COMPLEX NETWORKS 2017, Lyon, France, November 29 - December 1, 2017: Springer, 2017.
Medya, S., L. Cherkasova, and A. K. Singh, "Predictive Modeling and Scalability Analysis for Large Graph Analytics", IFIP/IEEE International Symposium on Integrated Network Management, {IM} 2017, 8-12 May, Lisbon, Portugal, 2017.
Ciftcioglu, E. Necdet, S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
Ciftcioglu, E. Necdet, S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
Ciftcioglu, E. Necdet, S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
2016
Hill, S. M., L. M. Heiser, T. Cokelaer, M. Unger, N. K. Nesser, D. E. Carlin, Y. Zhang, A. Sokolov, E. O. Paull, C. K. Wong, et al., "Inferring causal molecular networks: empirical assessment through a community-based effort", Nature methods, vol. 13, pp. 310–318, 2016.
Hill, S. M., L. M. Heiser, T. Cokelaer, M. Unger, N. K. Nesser, D. E. Carlin, Y. Zhang, A. Sokolov, E. O. Paull, C. K. Wong, et al., "Inferring causal molecular networks: empirical assessment through a community-based effort", Nature methods, vol. 13, pp. 310–318, 2016.
Ciftcioglu, E. N., S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology design under adversarial dynamics", 14th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2016, Tempe, AZ, USA, May 9-13, 2016, 2016.
Ciftcioglu, E. N., S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology design under adversarial dynamics", 14th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2016, Tempe, AZ, USA, May 9-13, 2016, 2016.
Ciftcioglu, E. N., S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology design under adversarial dynamics", 14th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2016, Tempe, AZ, USA, May 9-13, 2016, 2016.
2015
Lang, C. A., S. S. Ray, M. Liu, A. K. Singh, and G. D. Cuny, "Discovery of LRRK2 inhibitors using sequential in silico joint pharmacophore space (JPS) and ensemble docking", Bioorganic & medicinal chemistry letters, vol. 25, pp. 2713–2719, 2015.
2014
Copp, S. M., P. Bogdanov, M. Debord, A. Singh, and E. Gwinn, "Base motif recognition and design of DNA templates for fluorescent silver clusters by machine learning", Advanced Materials, vol. 26, pp. 5839–5845, 2014.
Zong, B., Y. Wu, J. Song, A. K. Singh, H. \ cCam, J. Han, and X. Yan, "Towards scalable critical alert mining", The 20th {ACM} {SIGKDD} International Conference on Knowledge Discovery and Data Mining, {KDD} '14, New York, NY, {USA} - August 24 - 27, 2014, pp. 1057–1066, 2014.
2011
Chipman, K. C., and A. K. Singh, "Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets", {BMC} Bioinformatics, vol. 12, pp. 7, 2011.
2009
cCamoglu, O. \, T. Can, and A. K. Singh, "Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks", Adv. Bioinformatics, vol. 2009, pp. 787128:1–787128:9, 2009.
cCamoglu, O. \, T. Can, and A. K. Singh, "Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks", Adv. Bioinformatics, vol. 2009, pp. 787128:1–787128:9, 2009.
Chipman, K. C., and A. K. Singh, "Predicting genetic interactions with random walks on biological networks", {BMC} Bioinformatics, vol. 10, 2009.
Macropol, K., T. Can, and A. K. Singh, "RRW: repeated random walks on genome-scale protein networks for local cluster discovery", {BMC} Bioinformatics, vol. 10, pp. 283, 2009.
2006
cCamoglu, O. \, T. Can, and A. K. Singh, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
cCamoglu, O. \, T. Can, and A. K. Singh, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
2005
Can, T., O. \ cCamoglu, and A. K. Singh, "Analysis of protein-protein interaction networks using random walks", Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD} 2005, Chicago, Illinois, USA, August 21, 2005, pp. 61–68, 2005.
Can, T., O. \ cCamoglu, and A. K. Singh, "Analysis of protein-protein interaction networks using random walks", Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD} 2005, Chicago, Illinois, USA, August 21, 2005, pp. 61–68, 2005.
cCamoglu, O. \, T. Can, A. K. Singh, and Y-F. Wang, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
cCamoglu, O. \, T. Can, A. K. Singh, and Y-F. Wang, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
2004
Can, T., O. \ cCamoglu, A. K. Singh, and Y-F. Wang, "Automated Protein Classification Using Consensus Decision", 3rd International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004, pp. 224–235, 2004.
Can, T., O. \ cCamoglu, A. K. Singh, and Y-F. Wang, "Automated Protein Classification Using Consensus Decision", 3rd International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004, pp. 224–235, 2004.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Index-based Similarity Search for Protein Structure Databases", J. Bioinformatics and Computational Biology, vol. 2, no. 1, pp. 99–126, 2004.
Bhattacharya, A., T. Can, T. Kahveci, A. K. Singh, and Y-F. Wang, "ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure", Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, pp. 264–275, 2004.
2003
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "PSI: indexing protein structures for fast similarity search", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 81–83, 2003.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Towards Index-based Similarity Search for Protein Structure Databases", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 148–158, 2003.