Publications

Found 180 results
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2012
Larusso, N. D., B. E. Ruttenberg, and A. K. Singh, "A Latent Parameter Node-Centric Model for Spatial Networks", CoRR, vol. abs/1210.4246, 2012.
Singh, A. K., "Modeling Complex Diseases Using Discriminative Network Fragments - (Invited Keynote Talk)", Bioinformatics Research and Applications - 8th International Symposium, {ISBRA} 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings, pp. 249, 2012.
Macropol, K., and A. K. Singh, "Reachability Analysis and Modeling of Dynamic Event Networks", Machine Learning and Knowledge Discovery in Databases - European Conference, {ECML} {PKDD} 2012, Bristol, UK, September 24-28, 2012. Proceedings, Part {I}, pp. 442–457, 2012.
Mongiov\`ı, M., P. Bogdanov, R. Ranca, A. K. Singh, E. E. Papalexakis, and C. Faloutsos, "SigSpot: mining significant anomalous regions from time-evolving networks (abstract only)", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2012, Scottsdale, AZ, USA, May 20-24, 2012, pp. 865, 2012.
Singh, V., and A. K. Singh, "SIMP: accurate and efficient near neighbor search in high dimensional spaces", 15th International Conference on Extending Database Technology, {EDBT} '12, Berlin, Germany, March 27-30, 2012, Proceedings, pp. 492–503, 2012.
2011
Vitenberg, R., D. Zinenko, K. Kvilekval, and A. K. Singh, "Analyzing Performance of Lease-Based Schemes under Failures", 30th {IEEE} Symposium on Reliable Distributed Systems {(SRDS} 2011), Madrid, Spain, October 4-7, 2011, pp. 193–202, 2011.
Ranu, S., and A. K. Singh, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", {PVLDB}, vol. 5, no. 3, pp. 169–180, 2011.
Ranu, S., and A. K. Singh, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", CoRR, vol. abs/1111.7165, 2011.
Guan, Z., J. Wu, Q. Zhang, A. K. Singh, and X. Yan, "Assessing and ranking structural correlations in graphs", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2011, Athens, Greece, June 12-16, 2011, pp. 937–948, 2011.
Macropol, K., and A. K. Singh, "Content-based Modeling and Prediction of Information Dissemination", International Conference on Advances in Social Networks Analysis and Mining, {ASONAM} 2011, Kaohsiung, Taiwan, 25-27 July 2011, pp. 21–28, 2011.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", {PVLDB}, vol. 5, no. 3, pp. 205–216, 2011.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", CoRR, vol. abs/1111.7168, 2011.
Bogdanov, P., M. Mongiov\`ı, and A. K. Singh, "Mining Heavy Subgraphs in Time-Evolving Networks", 11th {IEEE} International Conference on Data Mining, {ICDM} 2011, Vancouver, BC, Canada, December 11-14, 2011, pp. 81–90, 2011.
Ranu, S., and A. K. Singh, "Novel Method for Pharmacophore Analysis by Examining the Joint Pharmacophore Space", Journal of Chemical Information and Modeling, vol. 51, no. 5, pp. 1106–1121, 2011.
Larusso, N. D., and A. K. Singh, "Synopses for probabilistic data over large domains", {EDBT} 2011, 14th International Conference on Extending Database Technology, Uppsala, Sweden, March 21-24, 2011, Proceedings, pp. 389–400, 2011.
Chipman, K. C., and A. K. Singh, "Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets", {BMC} Bioinformatics, vol. 12, pp. 7, 2011.
2010
Kvilekval, K., D. Fedorov, B. Obara, A. K. Singh, and B. S. Manjunath, "Bisque: a platform for bioimage analysis and management", Bioinformatics, vol. 26, no. 4, pp. 544–552, 2010.
Sarkar, A., V. Singh, P. Ghosh, B. S. Manjunath, and A. K. Singh, "Efficient and Robust Detection of Duplicate Videos in a Large Database", {IEEE} Trans. Circuits Syst. Video Techn., vol. 20, no. 6, pp. 870–885, 2010.
Bhattacharya, A., A. Bhowmick, and A. K. Singh, "Finding top-k similar pairs of objects annotated with terms from an ontology", CoRR, vol. abs/1001.2625, 2010.
Bhattacharya, A., A. Bhowmick, and A. K. Singh, "Finding Top-k Similar Pairs of Objects Annotated with Terms from an Ontology", Scientific and Statistical Database Management, 22nd International Conference, {SSDBM} 2010, Heidelberg, Germany, June 30 - July 2, 2010. Proceedings, pp. 214–232, 2010.
Singh, V., S. Venkatesha, and A. K. Singh, "Geo-clustering of Images with Missing GeoTags", 2010 {IEEE} International Conference on Granular Computing, GrC 2010, San Jose, California, USA, 14-16 August 2010, pp. 420–425, 2010.
Bogdanov, P., and A. K. Singh, "Molecular Function Prediction Using Neighborhood Features", {IEEE/ACM} Trans. Comput. Biology Bioinform., vol. 7, no. 2, pp. 208–217, 2010.
Singh, V., and A. K. Singh, "Profile Based Sub-Image Search in Image Databases", CoRR, vol. abs/1010.1496, 2010.
He, H., and A. K. Singh, "Query Language and Access Methods for Graph Databases", Managing and Mining Graph Data, pp. 125–160, 2010.
Singh, V., A. Bhattacharya, and A. K. Singh, "Querying spatial patterns", {EDBT} 2010, 13th International Conference on Extending Database Technology, Lausanne, Switzerland, March 22-26, 2010, Proceedings, pp. 418–429, 2010.
Macropol, K., and A. K. Singh, "Scalable Discovery of Best Clusters on Large Graphs", {PVLDB}, vol. 3, no. 1, pp. 693–702, 2010.
Bogdanov, P., N. D. Larusso, and A. K. Singh, "Towards Community Discovery in Signed Collaborative Interaction Networks", {ICDMW} 2010, The 10th {IEEE} International Conference on Data Mining Workshops, Sydney, Australia, 13 December 2010, pp. 288–295, 2010.
2009
cCamoglu, O. \, T. Can, and A. K. Singh, "Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks", Adv. Bioinformatics, vol. 2009, pp. 787128:1–787128:9, 2009.
Singh, V., A. Bhattacharya, and A. K. Singh, "Finding Significant Subregions in Large Image Databases", CoRR, vol. abs/0906.3585, 2009.
Ranu, S., and A. K. Singh, "GraphSig: A Scalable Approach to Mining Significant Subgraphs in Large Graph Databases", Proceedings of the 25th International Conference on Data Engineering, {ICDE} 2009, March 29 2009 - April 2 2009, Shanghai, China, pp. 844–855, 2009.
Ranu, S., and A. K. Singh, "Mining Statistically Significant Molecular Substructures for Efficient Molecular Classification", Journal of Chemical Information and Modeling, vol. 49, no. 11, pp. 2537–2550, 2009.
Bulut, A., N. Koudas, A. Meka, A. K. Singh, and D. Srivastava, "Optimization Techniques for Reactive Network Monitoring", {IEEE} Trans. Knowl. Data Eng., vol. 21, no. 9, pp. 1343–1357, 2009.
Chipman, K. C., and A. K. Singh, "Predicting genetic interactions with random walks on biological networks", {BMC} Bioinformatics, vol. 10, 2009.
Macropol, K., T. Can, and A. K. Singh, "RRW: repeated random walks on genome-scale protein networks for local cluster discovery", {BMC} Bioinformatics, vol. 10, pp. 283, 2009.
2008
Singh, V., A. Bhattacharya, and A. K. Singh, "Efficient Computation of Statistical Significance of Query Results in Databases", Scientific and Statistical Database Management, 20th International Conference, {SSDBM} 2008, Hong Kong, China, July 9-11, 2008, Proceedings, pp. 509–516, 2008.
Bhattacharya, A., S. Levy, A. LeBoeuf, M. Gaylord, L. Wilson, A. K. Singh, and S. C. Feinstein, "A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics", {BMC} Bioinformatics, vol. 9, 2008.
He, H., and A. K. Singh, "Graphs-at-a-time: query language and access methods for graph databases", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2008, Vancouver, BC, Canada, June 10-12, 2008, pp. 405–418, 2008.
Ljosa, V., and A. K. Singh, "Top-k Spatial Joins of Probabilistic Objects", Proceedings of the 24th International Conference on Data Engineering, {ICDE} 2008, April 7-12, 2008, Cancún, México, pp. 566–575, 2008.
2007
Ljosa, V., and A. K. Singh, "APLA: Indexing Arbitrary Probability Distributions", Proceedings of the 23rd International Conference on Data Engineering, {ICDE} 2007, The Marmara Hotel, Istanbul, Turkey, April 15-20, 2007, pp. 946–955, 2007.
He, H., and A. K. Singh, "Efficient Algorithms for Mining Significant Substructures in Graphs with Quality Guarantees", Proceedings of the 7th {IEEE} International Conference on Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}, pp. 163–172, 2007.
Bulut, A., and A. K. Singh, "Indexing and Querying Data Streams", Data Streams - Models and Algorithms, pp. 237–259, 2007.
Bhattacharya, A., A. Meka, and A. K. Singh, "MIST: Distributed Indexing and Querying in Sensor Networks using Statistical Models", Proceedings of the 33rd International Conference on Very Large Data Bases, University of Vienna, Austria, September 23-27, 2007, pp. 854–865, 2007.
2006
He, H., and A. K. Singh, "Closure-Tree: An Index Structure for Graph Queries", Proceedings of the 22nd International Conference on Data Engineering, {ICDE} 2006, 3-8 April 2006, Atlanta, GA, {USA}, pp. 38, 2006.
Meka, A., and A. K. Singh, "Distributed Spatial Clustering in Sensor Networks", Advances in Database Technology - {EDBT} 2006, 10th International Conference on Extending Database Technology, Munich, Germany, March 26-31, 2006, Proceedings, pp. 980–1000, 2006.
He, H., and A. K. Singh, "GraphRank: Statistical Modeling and Mining of Significant Subgraphs in the Feature Space", Proceedings of the 6th {IEEE} International Conference on Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China, pp. 885–890, 2006.
Ljosa, V., A. Bhattacharya, and A. K. Singh, "Indexing Spatially Sensitive Distance Measures Using Multi-resolution Lower Bounds", Advances in Database Technology - {EDBT} 2006, 10th International Conference on Extending Database Technology, Munich, Germany, March 26-31, 2006, Proceedings, pp. 865–883, 2006.
cCamoglu, O. \, T. Can, and A. K. Singh, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
Ljosa, V., A. Bhattacharya, and A. K. Singh, "LB-Index: A Multi-Resolution Index Structure for Images", Proceedings of the 22nd International Conference on Data Engineering, {ICDE} 2006, 3-8 April 2006, Atlanta, GA, {USA}, pp. 144, 2006.
Ljosa, V., and A. K. Singh, "Probabilistic Segmentation and Analysis of Horizontal Cells", Proceedings of the 6th {IEEE} International Conference on Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China, pp. 980–985, 2006.
2005
Can, T., O. \ cCamoglu, and A. K. Singh, "Analysis of protein-protein interaction networks using random walks", Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD} 2005, Chicago, Illinois, USA, August 21, 2005, pp. 61–68, 2005.
Singh, A. K., A. Bhattacharya, and V. Ljosa, "Current Challenges in Bioimage Database Design", Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference Workshops {&} Poster Abstracts, {CSB} 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, pp. 375–379, 2005.
cCamoglu, O. \, T. Can, A. K. Singh, and Y-F. Wang, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
Meka, A., and A. K. Singh, "DIST: a distributed spatio-temporal index structure for sensor networks", Proceedings of the 2005 {ACM} {CIKM} International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005, pp. 139–146, 2005.
Bulut, A., A. K. Singh, and R. Vitenberg, "Distributed Data Streams Indexing using Content-Based Routing Paradigm", 19th International Parallel and Distributed Processing Symposium {(IPDPS} 2005), {CD-ROM} / Abstracts Proceedings, 4-8 April 2005, Denver, CO, {USA}, 2005.
Singh, A. K., "Scalable Index Structures for Biological Data", Data Mining in Bioinformatics, pp. 275–296, 2005.
Feng, Y., D. Agrawal, A. El Abbadi, and A. K. Singh, "Scalable ranking for preference queries", Proceedings of the 2005 {ACM} {CIKM} International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005, pp. 313–314, 2005.
Bulut, A., and A. K. Singh, "A Unified Framework for Monitoring Data Streams in Real Time", Proceedings of the 21st International Conference on Data Engineering, {ICDE} 2005, 5-8 April 2005, Tokyo, Japan, pp. 44–55, 2005.
Bhattacharya, A., V. Ljosa, J-Y. Pan, M. R. Verardo, H-J. Yang, C. Faloutsos, and A. K. Singh, "ViVo: Visual Vocabulary Construction for Mining Biomedical Images", Proceedings of the 5th {IEEE} International Conference on Data Mining {(ICDM} 2005), 27-30 November 2005, Houston, Texas, {USA}, pp. 50–57, 2005.
2004
Can, T., O. \ cCamoglu, A. K. Singh, and Y-F. Wang, "Automated Protein Classification Using Consensus Decision", 3rd International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004, pp. 224–235, 2004.
Singh, A. K., B. S. Manjunath, and R. F. Murphy, "A Distributed Database for BioMolecular Images", {SIGMOD} Record, vol. 33, no. 2, pp. 65–71, 2004.
Vitenberg, R., K. Kvilekval, and A. K. Singh, "Increasing Concurrency in Databases Using Program Analysis", {ECOOP} 2004 - Object-Oriented Programming, 18th European Conference, Oslo, Norway, June 14-18, 2004, Proceedings, pp. 341–363, 2004.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Index-based Similarity Search for Protein Structure Databases", J. Bioinformatics and Computational Biology, vol. 2, no. 1, pp. 99–126, 2004.
Kahveci, T., and A. K. Singh, "Optimizing Similarity Search for Arbitrary Length Time Series Queries", {IEEE} Trans. Knowl. Data Eng., vol. 16, no. 4, pp. 418–433, 2004.
Bhattacharya, A., T. Can, T. Kahveci, A. K. Singh, and Y-F. Wang, "ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure", Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, pp. 264–275, 2004.
Kahveci, T., and A. K. Singh, "Progressive Searching of Biological Sequences", {IEEE} Data Eng. Bull., vol. 27, no. 3, pp. 32–39, 2004.
Kahveci, T., V. Ljosa, and A. K. Singh, "Speeding up whole-genome alignment by indexing frequency vectors", Bioinformatics, vol. 20, no. 13, pp. 2122–2134, 2004.
Kvilekval, K., and A. K. Singh, "SPREE: Object Prefetching for Mobile Computers", On the Move to Meaningful Internet Systems 2004: CoopIS, DOA, and ODBASE, {OTM} Confederated International Conferences, Agia Napa, Cyprus, October 25-29, 2004, Proceedings, Part {II}, pp. 1340–1357, 2004.
2003
Bulut, A., R. Vitenberg, F. Emekçi, and A. K. Singh, "An Adaptive and Scalable Middleware for Distributed Indexing of Data Streams", Databases, Information Systems, and Peer-to-Peer Computing, First International Workshop, DBISP2P, Berlin Germany, September 7-8, 2003, Revised Papers, pp. 123–137, 2003.
Prabhakar, S., D. Agrawal, A. El Abbadi, A. K. Singh, and T. R. Smith, "Browsing and placement of multi-resolution images on parallel disks", Multimedia Syst., vol. 8, no. 6, pp. 459–469, 2003.
Heymans, M., and A. K. Singh, "Deriving phylogenetic trees from the similarity analysis of metabolic pathways", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 138–146, 2003.
Lencevicius, R., U. Hölzle, and A. K. Singh, "Dynamic Query-Based Debugging of Object-Oriented Programs", Autom. Softw. Eng., vol. 10, no. 1, pp. 39–74, 2003.
Kahveci, T., and A. K. Singh, "Fast alignment of large genome databases", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 768–770, 2003.
Lang, C. A., and A. K. Singh, "Faster Similarity Search for Multimedia Data Via Query Transformations", Int. J. Image Graphics, vol. 3, no. 1, pp. 3–30, 2003.
Kahveci, T., and A. K. Singh, "Genome on Demand: Interactive Substring Searching", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 551–552, 2003.
Kahveci, T., C. A. Lang, and A. K. Singh, "Joining Massive High-Dimensional Datasets", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 265–276, 2003.
Kahveci, T., and A. K. Singh, "MAP: Searching Large Genome Databases", Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003, Lihue, Hawaii, USA, January 3-7, 2003, pp. 303–314, 2003.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "PSI: indexing protein structures for fast similarity search", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 81–83, 2003.
Singh, A. K., "Querying and Mining Biological Databases", {OMICS}, vol. 7, no. 1, pp. 7–8, 2003.
Bulut, A., and A. K. Singh, "SWAT: Hierarchical Stream Summarization in Large Networks", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 303–314, 2003.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Towards Index-based Similarity Search for Protein Structure Databases", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 148–158, 2003.

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