Publications

Found 179 results
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Presentation
Amelkin, V., O. Askarisichani, Y. Ji Kim, T. W. Malone, and A. K. Singh, "Dynamics of Collective Performance in Collaboration Networks", XXXVI International Sunbelt Conference, Newport Beach, California, US, International Network for Social Network Analysis (INSNA), 2016.
Journal Article
Chipman, K. C., and A. K. Singh, "Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets", {BMC} Bioinformatics, vol. 12, pp. 7, 2011.
Ye, W., Z. Wang, R. Redberg, and A. K. Singh, "Tree++: Truncated Tree Based Graph Kernels", IEEE Trans. Knowl. Data Eng., vol. 33, pp. 1778–1789, 2021.
Ciftcioglu, E. Necdet, S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology Design Games and Dynamics in Adversarial Environments", IEEE Journal on Selected Areas in Communications, vol. 35, pp. 628–642, 2017.
Kang, B., H. Wright, T. Höllerer, A. K. Singh, and J. O’Donovan, "Through the Grapevine: A Comparison of News in Microblogs and Traditional Media", Trends in Social Network Analysis: Information Propagation, User Behavior Modeling, Forecasting, and Vulnerability Assessment, pp. 135–168, 2017.
Dang, X. Hong, H. You, A. K. Singh, and S. Grafton, "Subnetwork Mining with Spatial and Temporal Smoothness", SIAM international conference on data mining (SDM), 2017.
Wu, J., Z. Guan, Q. Zhang, A. K. Singh, and X. Yan, "Static and Dynamic Structural Correlations in Graphs", {IEEE} Trans. Knowl. Data Eng., vol. 25, no. 9, pp. 2147–2160, 2013.
Kahveci, T., V. Ljosa, and A. K. Singh, "Speeding up whole-genome alignment by indexing frequency vectors", Bioinformatics, vol. 20, no. 13, pp. 2122–2134, 2004.
Hallgrímsson, H. T., M. Cieslak, L. Foschini, S. T. Grafton, and A. K. Singh, "Spatial coherence of oriented white matter microstructure: Applications to white matter regions associated with genetic similarity", NeuroImage, 2018.
Bogdanov, P., M. Busch, J. Moehlis, A. K. Singh, and B. K. Szymanski, "The Social Media Genome: Modeling Individual Topic-Specific Behavior in Social Media", CoRR, vol. abs/1307.0309, 2013.
Shahriari, M., O. Askarisich Sichani, J. Gharibshah, and M. Jalili, "Sign prediction in social networks based on users reputation and optimism", Social Network Analysis and Mining, vol. 6, pp. 91, 2016.
Macropol, K., and A. K. Singh, "Scalable Discovery of Best Clusters on Large Graphs", {PVLDB}, vol. 3, no. 1, pp. 693–702, 2010.
Macropol, K., T. Can, and A. K. Singh, "RRW: repeated random walks on genome-scale protein networks for local cluster discovery", {BMC} Bioinformatics, vol. 10, pp. 283, 2009.
Singh, A. K., "Querying and Mining Biological Databases", {OMICS}, vol. 7, no. 1, pp. 7–8, 2003.
Ruttenberg, B. E., G. Luna, G. P. Lewis, S. K. Fisher, and A. K. Singh, "Quantifying spatial relationships from whole retinal images", Bioinformatics, vol. 29, no. 7, pp. 940–946, 2013.
Kahveci, T., and A. K. Singh, "Progressive Searching of Biological Sequences", {IEEE} Data Eng. Bull., vol. 27, no. 3, pp. 32–39, 2004.
Singh, V., and A. K. Singh, "Profile Based Sub-Image Search in Image Databases", CoRR, vol. abs/1010.1496, 2010.
Askarisichani, O., F. Bullo, N. E. Friedkin, and A. K. Singh, "Predictive models for human–AI nexus in group decision making", Annals of the New York Academy of Sciences, vol. 1514, pp. 70–81, 2022.
Chipman, K. C., and A. K. Singh, "Predicting genetic interactions with random walks on biological networks", {BMC} Bioinformatics, vol. 10, 2009.
Amelkin, V., F. Bullo, and A. K. Singh, "Polar Opinion Dynamics in Social Networks", IEEE Transactions on Automatic Control (TAC), 2017.
Dang, X-H., A. Silva, A. Singh, A. Swami, and P. Basu, "Outlier Detection from Network Data with Subnetwork Interpretation", IEEE International Conference Data Mining (ICDM), 2016.
Kahveci, T., and A. K. Singh, "Optimizing Similarity Search for Arbitrary Length Time Series Queries", {IEEE} Trans. Knowl. Data Eng., vol. 16, no. 4, pp. 418–433, 2004.
Bulut, A., N. Koudas, A. Meka, A. K. Singh, and D. Srivastava, "Optimization Techniques for Reactive Network Monitoring", {IEEE} Trans. Knowl. Data Eng., vol. 21, no. 9, pp. 1343–1357, 2009.
Ranu, S., and A. K. Singh, "Novel Method for Pharmacophore Analysis by Examining the Joint Pharmacophore Space", Journal of Chemical Information and Modeling, vol. 51, no. 5, pp. 1106–1121, 2011.
Singh, V., and A. K. Singh, "Nearest Keyword Set Search in Multi-dimensional Datasets", CoRR, vol. abs/1409.3867, 2014.
Singh, V., B. Zong, and A. K. Singh, "Nearest Keyword Set Search in Multi-Dimensional Datasets", {IEEE} Trans. Knowl. Data Eng., vol. 28, pp. 741–755, 2016.
Bogdanov, P., and A. K. Singh, "Molecular Function Prediction Using Neighborhood Features", {IEEE/ACM} Trans. Comput. Biology Bioinform., vol. 7, no. 2, pp. 208–217, 2010.
Laos, V., D. Bishop, C. A. Lang, N. M. Marsh, K. Lazar Cantrell, S. K. Buratto, A. K. Singh, and M. T. Bowers, "Modulating ALS-Related Amyloidogenic TDP-43307–319 Oligomeric Aggregates with Computationally Derived Therapeutic Molecules", Biochemistry, vol. 59, pp. 499–508, 2019.
Bogdanov, P., M. Busch, J. Moehlis, A. K. Singh, and B. K. Szymanski, "Modeling individual topic-specific behavior and influence backbone networks in social media", Social Netw. Analys. Mining, vol. 4, no. 1, pp. 204, 2014.
Ye, W., F. Bullo, N. E. Friedkin, and A. K. Singh, "Modeling Human-AI Team Decision Making", CoRR, vol. abs/2201.02759, 2022.
Ranu, S., and A. K. Singh, "Mining Statistically Significant Molecular Substructures for Efficient Molecular Classification", Journal of Chemical Information and Modeling, vol. 49, no. 11, pp. 2537–2550, 2009.
Medya, S., P. Bogdanov, and A. Singh, "Making a Small World Smaller: Path Optimization in Networks", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2018.
Jaffe, S., A. Davydov, D. Lapsekili, A. K. Singh, and F. Bullo, "Learning Neural Contracting Dynamics: Extended Linearization and Global Guarantees", CoRR, vol. abs/2402.08090, 2024.
Ye, W., O. Askarisichani, A. T. Jones, and A. K. Singh, "Learning Deep Graph Representations via Convolutional Neural Networks", IEEE Trans. Knowl. Data Eng., vol. 34, pp. 2268–2279, 2022.
Bogdanov, P., N. Dereli, X-H. Dang, D. S. Bassett, N. F. Wymbs, S. T. Grafton, and A. K. Singh, "Learning about learning: Mining human brain sub-network biomarkers from fMRI data", PLoS one, vol. 12, pp. e0184344, 2017.
Larusso, N. D., B. E. Ruttenberg, and A. K. Singh, "A Latent Parameter Node-Centric Model for Spatial Networks", CoRR, vol. abs/1210.4246, 2012.
cCamoglu, O. \, T. Can, and A. K. Singh, "Integrating multi-attribute similarity networks for robust representation of the protein space", Bioinformatics, vol. 22, no. 13, pp. 1585–1592, 2006.
Downey, M. A., M. J. Giammona, C. A. Lang, S. K. Buratto, A. Singh, and M. T. Bowers, "Inhibiting and remodeling toxic amyloid-beta oligomer formation using a computationally designed drug molecule that targets Alzheimer’s disease", Journal of The American Society for Mass Spectrometry, vol. 30, pp. 85–93, 2018.
Zong, B., Y. Wu, A. K. Singh, and X. Yan, "Inferring the Underlying Structure of Information Cascades", CoRR, vol. abs/1210.3587, 2012.
Hill, S. M., L. M. Heiser, T. Cokelaer, M. Unger, N. K. Nesser, D. E. Carlin, Y. Zhang, A. Sokolov, E. O. Paull, C. K. Wong, et al., "Inferring causal molecular networks: empirical assessment through a community-based effort", Nature methods, vol. 13, pp. 310–318, 2016.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", CoRR, vol. abs/1111.7168, 2011.
Ruttenberg, B. E., and A. K. Singh, "Indexing the Earth Mover's Distance Using Normal Distributions", {PVLDB}, vol. 5, no. 3, pp. 205–216, 2011.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Index-based Similarity Search for Protein Structure Databases", J. Bioinformatics and Computational Biology, vol. 2, no. 1, pp. 99–126, 2004.
Ye, W., D. Mautz, C. Böhm, A. K. Singh, and C. Plant, "Incorporating User's Preference into Attributed Graph Clustering", IEEE Trans. Knowl. Data Eng., vol. 33, pp. 3716–3728, 2021.
Ye, W., J. Yang, S. Medya, and A. K. Singh, "Incorporating Heterophily into Graph Neural Networks for Graph Classification", CoRR, vol. abs/2203.07678, 2022.
Ye, W., Z. Huang, Y. Hong, and A. K. Singh, "Graph Neural Diffusion Networks for Semi-supervised Learning", CoRR, vol. abs/2201.09698, 2022.
Hoang, M. X., X-H. Dang, X. Wu, Z. Yan, and A. K. Singh, "GPOP: Scalable Group-level Popularity Prediction for Online Content in Social Networks", Proceedings of the 26th International Conference on World Wide Web, 2017.
Bhattacharya, A., S. Levy, A. LeBoeuf, M. Gaylord, L. Wilson, A. K. Singh, and S. C. Feinstein, "A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics", {BMC} Bioinformatics, vol. 9, 2008.
Bhattacharya, A., A. Bhowmick, and A. K. Singh, "Finding top-k similar pairs of objects annotated with terms from an ontology", CoRR, vol. abs/1001.2625, 2010.
Singh, V., A. Bhattacharya, and A. K. Singh, "Finding Significant Subregions in Large Image Databases", CoRR, vol. abs/0906.3585, 2009.
Kar, D., M. Kosan, S. Medya, D. Mandal, A. Silva, P. Dey, and S. Sanyal, "Feature-based Individual Fairness in k-Clustering", International Conference on Autonomous Agents and Multiagent Systems (AAMAS Extended Abstract), 2023.
Lang, C. A., and A. K. Singh, "Faster Similarity Search for Multimedia Data Via Query Transformations", Int. J. Image Graphics, vol. 3, no. 1, pp. 3–30, 2003.
Askarisichani, O., E. Y. Huang, K. S. Sato, N. E. Friedkin, F. Bullo, and A. K. Singh, "Expertise and confidence explain how social influence evolves along intellective tasks", CoRR, vol. abs/2011.07168, 2020.
Hallgrímsson, H. T., R. Sharan, S. T. Grafton, and A. K. Singh, "Estimating localized complexity of white-matter wiring with GANs", Medical Imaging meets NeurIPS, 2019.
Sarkar, A., V. Singh, P. Ghosh, B. S. Manjunath, and A. K. Singh, "Efficient and Robust Detection of Duplicate Videos in a Large Database", {IEEE} Trans. Circuits Syst. Video Techn., vol. 20, no. 6, pp. 870–885, 2010.
Lencevicius, R., U. Hölzle, and A. K. Singh, "Dynamic Query-Based Debugging of Object-Oriented Programs", Autom. Softw. Eng., vol. 10, no. 1, pp. 39–74, 2003.
Singh, A. K., B. S. Manjunath, and R. F. Murphy, "A Distributed Database for BioMolecular Images", {SIGMOD} Record, vol. 33, no. 2, pp. 65–71, 2004.
Lang, C. A., S. S. Ray, M. Liu, A. K. Singh, and G. D. Cuny, "Discovery of LRRK2 inhibitors using sequential in silico joint pharmacophore space (JPS) and ensemble docking", Bioorganic & medicinal chemistry letters, vol. 25, pp. 2713–2719, 2015.
cCamoglu, O. \, T. Can, A. K. Singh, and Y-F. Wang, "Decision Tree Based Information Integration for Automated Protein Classification", J. Bioinformatics and Computational Biology, vol. 3, no. 3, pp. 717–742, 2005.
Jin, Y., M. A. Downey, A. Singh, S. K. Buratto, and M. T. Bowers, "Computationally designed small molecules disassemble both soluble oligomers and protofibrils of amyloid β-protein responsible for Alzheimer’s disease", ACS Chemical Neuroscience, vol. 14, pp. 2717–2726, 2023.
Liu, X., S. Duan, Y. Jin, E. Walker, M. Tsao, J. H. Jang, Z. Chen, A. K. Singh, K. Lazar Cantrell, H. I. Ingolfsson, et al., "Computationally Designed Molecules Modulate ALS-Related Amyloidogenic TDP-43307–319 Aggregation", ACS Chemical Neuroscience, vol. 14, pp. 4395–4408, 2023.
Prabhakar, S., D. Agrawal, A. El Abbadi, A. K. Singh, and T. R. Smith, "Browsing and placement of multi-resolution images on parallel disks", Multimedia Syst., vol. 8, no. 6, pp. 459–469, 2003.
Kvilekval, K., D. Fedorov, U. Gaur, S. Goff, N. Merchant, B. S. Manjunath, and A. K. Singh, "Bisque: Advances in Bioimage Databases", {IEEE} Data Eng. Bull., vol. 35, no. 3, pp. 56–64, 2012.
Kvilekval, K., D. Fedorov, B. Obara, A. K. Singh, and B. S. Manjunath, "Bisque: a platform for bioimage analysis and management", Bioinformatics, vol. 26, no. 4, pp. 544–552, 2010.
Zong, B., X. Xiao, Z. Li, Z. Wu, Z. Qian, X. Yan, A. K. Singh, and G. Jiang, "Behavior Query Discovery in System-Generated Temporal Graphs", {PVLDB}, vol. 9, pp. 240–251, 2015.
Copp, S. M., P. Bogdanov, M. Debord, A. Singh, and E. Gwinn, "Base motif recognition and design of DNA templates for fluorescent silver clusters by machine learning", Advanced Materials, vol. 26, pp. 5839–5845, 2014.
Medya, S., A. Silva, and A. K. Singh, "Approximate Algorithms for Data-Driven Influence Limitation", IEEE Trans. Knowl. Data Eng., vol. 34, pp. 2641–2652, 2022.
Medya, S., A. Silva, and A. Singh, "Approximate Algorithms for Data-driven Influence Limitation", IEEE Transactions on Knowledge and Data Engineering (TKDE), 2020.
Luong, K-D., and A. Singh, "Application of Transformers in Cheminformatics", Journal of Chemical Information and Modeling, vol. 64, pp. 4392-4409, 05/2024.
Ranu, S., and A. K. Singh, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", CoRR, vol. abs/1111.7165, 2011.
Ranu, S., and A. K. Singh, "Answering Top-k Queries Over a Mixture of Attractive and Repulsive Dimensions", {PVLDB}, vol. 5, no. 3, pp. 169–180, 2011.
Kosan, M., L. He, S. Agrawal, H. Liu, and C. Chetia, "AI Decision Systems with Feedback Loop Active Learner", WSDM Crowd Science Workshop, 2023.
cCamoglu, O. \, T. Can, and A. K. Singh, "Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks", Adv. Bioinformatics, vol. 2009, pp. 787128:1–787128:9, 2009.
Conference Proceedings
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, KDD 2023, Long Beach, CA, USA, August 6-10, 2023: ACM, 2023.
Kosan, M., S. Verma, B. Armgaan, K. Pahwa, A. Singh, S. Medya, and S. Ranu, "GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarking", The Twelfth International Conference on Learning Representations (ICLR), 2024.
Bhowmick, A., M. Kosan, Z. Huang, A. Singh, and S. Medya, "DGCLUSTER: A Neural Framework for Attributed Graph Clustering via Modularity Maximization", The 38th Annual AAAI Conference on Artificial Intelligence (AAAI'24), 2024.
Conference Paper
Bhattacharya, A., V. Ljosa, J-Y. Pan, M. R. Verardo, H-J. Yang, C. Faloutsos, and A. K. Singh, "ViVo: Visual Vocabulary Construction for Mining Biomedical Images", Proceedings of the 5th {IEEE} International Conference on Data Mining {(ICDM} 2005), 27-30 November 2005, Houston, Texas, {USA}, pp. 50–57, 2005.
Bulut, A., and A. K. Singh, "A Unified Framework for Monitoring Data Streams in Real Time", Proceedings of the 21st International Conference on Data Engineering, {ICDE} 2005, 5-8 April 2005, Tokyo, Japan, pp. 44–55, 2005.
Medya, S., P. Bogdanov, and A. K. Singh, "Towards Scalable Network Delay Minimization", {IEEE} 16th International Conference on Data Mining, {ICDM} 2016, December 12-15, 2016, Barcelona, Spain, 2016.
Zong, B., Y. Wu, J. Song, A. K. Singh, H. \ cCam, J. Han, and X. Yan, "Towards scalable critical alert mining", The 20th {ACM} {SIGKDD} International Conference on Knowledge Discovery and Data Mining, {KDD} '14, New York, NY, {USA} - August 24 - 27, 2014, pp. 1057–1066, 2014.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "Towards Index-based Similarity Search for Protein Structure Databases", 2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003, pp. 148–158, 2003.
Bogdanov, P., N. D. Larusso, and A. K. Singh, "Towards Community Discovery in Signed Collaborative Interaction Networks", {ICDMW} 2010, The 10th {IEEE} International Conference on Data Mining Workshops, Sydney, Australia, 13 December 2010, pp. 288–295, 2010.
Ciftcioglu, E. N., S. Pal, K. S. Chan, D. H. Cansever, A. Swami, A. K. Singh, and P. Basu, "Topology design under adversarial dynamics", 14th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2016, Tempe, AZ, USA, May 9-13, 2016, 2016.
Ljosa, V., and A. K. Singh, "Top-k Spatial Joins of Probabilistic Objects", Proceedings of the 24th International Conference on Data Engineering, {ICDE} 2008, April 7-12, 2008, Cancún, México, pp. 566–575, 2008.
Larusso, N. D., and A. K. Singh, "Synopses for probabilistic data over large domains", {EDBT} 2011, 14th International Conference on Extending Database Technology, Uppsala, Sweden, March 21-24, 2011, Proceedings, pp. 389–400, 2011.
Bulut, A., and A. K. Singh, "SWAT: Hierarchical Stream Summarization in Large Networks", Proceedings of the 19th International Conference on Data Engineering, March 5-8, 2003, Bangalore, India, pp. 303–314, 2003.
Kocayusufoglu, F., M. X. Hoang, and A. K. Singh, "Summarizing Network Processes with Network-constrained Boolean Matrix Factorization", IEEE International Conference on Data Mining (ICDM), 2018.
Hoang, M. X., R. Ramanathan, and A. K. Singh, "Structure and evolution of missed collaborations in large networks", 2014 Proceedings {IEEE} {INFOCOM} Workshops, Toronto, ON, Canada, April 27 - May 2, 2014, pp. 849–854, 2014.
Kvilekval, K., and A. K. Singh, "SPREE: Object Prefetching for Mobile Computers", On the Move to Meaningful Internet Systems 2004: CoopIS, DOA, and ODBASE, {OTM} Confederated International Conferences, Agia Napa, Cyprus, October 25-29, 2004, Proceedings, Part {II}, pp. 1340–1357, 2004.
Stück, D., H. T. Hallgrímsson, G. Ver Steeg, A. Epasto, and L. Foschini, "The Spread of Physical Activity Through Social Networks", Proceedings of the 26th International Conference on World Wide Web: ACM, 2017.
Silva, A., A. Singh, and A. Swami, " Spectral Algorithms for Temporal Graph Cuts", The Web Conference (WWW), 2018.
Bogdanov, P., M. Busch, J. Moehlis, A. K. Singh, and B. K. Szymanski, "The social media genome: modeling individual topic-specific behavior in social media", Advances in Social Networks Analysis and Mining 2013, {ASONAM} '13, Niagara, ON, Canada - August 25 - 29, 2013, pp. 236–242, 2013.
Singh, V., and A. K. Singh, "SIMP: accurate and efficient near neighbor search in high dimensional spaces", 15th International Conference on Extending Database Technology, {EDBT} '12, Berlin, Germany, March 27-30, 2012, Proceedings, pp. 492–503, 2012.
Mongiov\`ı, M., P. Bogdanov, R. Ranca, A. K. Singh, E. E. Papalexakis, and C. Faloutsos, "SigSpot: mining significant anomalous regions from time-evolving networks (abstract only)", Proceedings of the {ACM} {SIGMOD} International Conference on Management of Data, {SIGMOD} 2012, Scottsdale, AZ, USA, May 20-24, 2012, pp. 865, 2012.
Feng, Y., D. Agrawal, A. El Abbadi, and A. K. Singh, "Scalable ranking for preference queries", Proceedings of the 2005 {ACM} {CIKM} International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005, pp. 313–314, 2005.
Macropol, K., and A. K. Singh, "Reachability Analysis and Modeling of Dynamic Event Networks", Machine Learning and Knowledge Discovery in Databases - European Conference, {ECML} {PKDD} 2012, Bristol, UK, September 24-28, 2012. Proceedings, Part {I}, pp. 442–457, 2012.
Singh, V., A. Bhattacharya, and A. K. Singh, "Querying spatial patterns", {EDBT} 2010, 13th International Conference on Extending Database Technology, Lausanne, Switzerland, March 22-26, 2010, Proceedings, pp. 418–429, 2010.
cCamoglu, O. \, T. Kahveci, and A. K. Singh, "PSI: indexing protein structures for fast similarity search", Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia, pp. 81–83, 2003.
Bhattacharya, A., T. Can, T. Kahveci, A. K. Singh, and Y-F. Wang, "ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure", Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004, pp. 264–275, 2004.
Ljosa, V., and A. K. Singh, "Probabilistic Segmentation and Analysis of Horizontal Cells", Proceedings of the 6th {IEEE} International Conference on Data Mining {(ICDM} 2006), 18-22 December 2006, Hong Kong, China, pp. 980–985, 2006.

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